Inflammatory Bowel Disease NGS Panel

  • Panel Description
  • Test Description
  • CPT Codes
  • Resources

Panel Description

Inflammatory bowel disease (IBD) is the collective term for a variety of conditions characterized by chronic inflammation of the intestines. The two most common forms of IBD are Chron’s disease and ulcerative colitis. There are also indeterminate cases that do not fall neatly into these categories.

The Fulgent Inflammatory Bowel Disease NGS Panel includes genes that are associated with epithelial barrier defects, phagocytic defects, T and B cell defects, T regulatory cells and regulatory pathway defects, hyperinflammatory and autoinflammatory defects, and other genes associated with features of inflammatory bowel disease.

This panel may be appropriate for anyone with a personal or family history of IBD and its associated symptoms, including loose stools, diarrhea, abdominal pain, blood in the stool, urgent need to move bowels, weight loss, or poor weight gain. Testing has a higher yield in patients with very early onset IBD, defined by onset of symptoms prior to the age of 6 years.

Identification of a specific genetic etiology can help confirm a clinical diagnosis and/or determine medical management for a patient. It can guide the course of treatment and illuminate potential risks for close relatives of the patient.

Genetic testing for inflammatory bowel disease can:
  • Establish or confirm the appropriate diagnosis
  • Identify risks for additional related symptoms
  • Assist in modifying lifestyle changes, including diet and exercise
  • Result in more personalized treatment and symptom management
  • Inform family members about their own risk factors
  • Connect patients to relevant resources & support
  • Provide options for family planning

Test Description

Print
  • Sequencing
  • Del/Dup
  • Rush / STAT
  • Exclude VUS
  • MCC
  • Duo/Trio
2 - 3 weeks
Call for details
ADA, ADAM17, AICDA, AIRE, ANKZF1, ARPC1B, BACH2, BTK, CARD8, CARMIL2, CASP8, CD19, CD3G, CD40, CD40LG, CD55, CD81, CHD7, CIITA, COL7A1, CR2, CTLA4, CYBA, CYBB, CYBC1, DCLRE1C, DKC1, DOCK8, DUOX2, FCHO1, FERMT1, FOXP3, FUT2, G6PC3, GUCY2C, HPS1, HPS4, HPS6, ICOS, IKBKB, IKZF1, IL10, IL10RA, IL10RB, IL21, IL23R, IL2RA, IL2RB, IL2RG, IL7R, ITCH, ITGB2, JAK1, LCK, LIG4, LRBA, LYST, MALT1, MEFV, MVK, MYO5A, NCF2, NCF4, NFAT5, NFKB1, NFKB2, NLRC4, NLRP12, NOD2, NOP10, NPC1, PIK3CD, PIK3R1, PLCG2, POLA1, PRF1, PTEN, RAB27A, RAC1, RAC2, RAG1, RAG2, RET, RFX5, RFXANK, RFXAP, RIPK1, RTEL1, SH2D1A, SI, SKIV2L, SLC37A4, SLC9A3, SLCO2A1, STAT1, STAT3, STAT5B, STIM1, STX3, STXBP2, STXBP3, TAP1, TAP2, TERC, TERT, TGFB1, TGFBR1, TGFBR2, TINF2, TNFAIP3, TNFRSF13B, TRAF3, TRIM22, TTC37, TTC7A, UNC13D, UNG, WAS, XIAP, ZAP70, ZBTB24, ZNF341 ( 122 genes )
96% at 20x
Blood (two 4ml EDTA tubes, lavender top) or Extracted DNA (3ug in EB buffer) or Buccal Swab or Saliva (kits available upon request)
All sequencing technologies have limitations. This analysis is performed by Next Generation Sequencing (NGS) and is designed to examine coding regions and splicing junctions. Although next generation sequencing technologies and our bioinformatics analysis significantly reduce the contribution of pseudogene sequences or other highly-homologous sequences, these may still occasionally interfere with the technical ability of the assay to identify pathogenic variant alleles in both sequencing and deletion/duplication analyses. Sanger sequencing is used to confirm variants with low quality scores and to meet coverage standards. If ordered, deletion/duplication analysis can identify alterations of genomic regions which include one whole gene (buccal swab specimens and whole blood specimens) and are two or more contiguous exons in size (whole blood specimens only); single exon deletions or duplications may occasionally be identified, but are not routinely detected by this test. Identified putative deletions or duplications are confirmed by an orthogonal method (qPCR or MLPA). This assay will not detect certain types of genomic alterations which may cause disease such as, but not limited to, translocations or inversions, repeat expansions (eg. trinucleotides or hexanucleotides), alterations in most regulatory regions (promoter regions) or deep intronic regions (greater than 20bp from an exon). This assay is not designed or validated for the detection of somatic mosaicism or somatic mutations.

Gene Notes
CD40LG The current testing method does not assess trinucleotide repeat expansions in this gene.
DUOX2 The current testing method is not able to reliably detect variants in exons 6-8 of the DUOX2 gene (NM_014080.5) due to significant interference by the highly homologous gene, DUOX1.
CPT Code 81323, 81401, 81402, 81403, 81404, 81405, 81406, 81407

NOTE:  The CPT codes listed on the website are in accordance with Current Procedural Terminology, a publication of the American Medical Association. CPT codes are provided here for the convenience of our clients. Clients who bill for services should make the final decision on which codes to use.

Resources

DescriptionDownload
Inflammatory Bowel Disease